MiSeq Documentation

  • Supporting Documents

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  • MiSeq Sample Sheet Quick Reference Guide

    Guidance for setting up sample sheets for sequencing on the MiSeq.

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    < 1 MB

    Aug 14, 2013


  • MiSeq Run Folder Quick Reference Card

    Instructions for using the MiSeq output and analysis folders.

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    < 1 MB

    Apr 18, 2014


  • Cluster Optimization Overview

    Strategies for optimizing cluster density and preventing and diagnosing clustering issues on Illumina flow cells.

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    Apr 26, 2021


  • Indexed Sequencing Overview

    The sequencing process for single- and dual-indexed runs on Illumina instruments.

    View Online Help

    Aug 13, 2024


  • Security and Networking

    Guidelines for managing the security of the control computer on your sequencing system. Use these guidelines to configure your system and ensure a more secure operating environment.

    It is strongly recommended that you review this documentation to keep your instrument secure.

    View Online Help

    Jan 12, 2024


  • MiSeq Sequencing Welcome Card

    Graphical introduction to the MiSeq System.

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    < 1 MB

    Jul 2, 2013


Product Literature

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Illumina Sequencing Portfolio Brochure
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Brochure 9 MB Mar 5, 2015
MiSeq Brochure
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Brochure 3 MB