The SolCAP Tomato genotyping panel was designed by the Solanaceae Coordinated Agricultural Project (SolCAP) and is focused on translating the latest genomic advances to Solanaceae breeding programs. The SNPs include Sanger-based eSNPs from genome sequencing of TA496 ESTs and Heinz 1706 (processing tomato) lines, and SNPs identified by Illumina transcriptome sequencing of NC84173 (fresh-market), FL7600 (fresh-market), OH08-6405 (fresh-market), OH9242 (processing tomato), PI114490 (cherry), and PI128216 (S. pimpinellifolium) lines. SolCAP generated sequence data for four cultivated varieties, an S. lycopersicum var. cerasiformae accession, and an S. pimpinellifolium accession. The Community has provided a cluster file for the SolCAP Tomato SNP array suitable for fast automated analysis of all project sizes. It is suitable as base content for over 80,000 Add-On Content for a customized Tomato genotyping array.
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