Sequencing Data Analysis
Software to help you focus on your research
Spend more time doing research and less time setting up sequencing software
Sequencing Data Analysis Solutions
Sequencing generates large volumes of data, and the analysis required can be intimidating. Fortunately, the analytical tools available today take most of the manual work out of the next-generation sequencing (NGS) data analysis process, making it easier for you to glean meaningful information quickly.
User-friendly Illumina tools smooth the process of analyzing sequencing data, so you can spend more time doing research and less time configuring workflows. Our NGS software packages perform analysis after the on-instrument data processing is complete and offer optimal time to answer.
Sequencing Data Analysis Process
The NGS data analysis process includes three main steps: primary, secondary, and tertiary data analysis. Some steps are performed automatically on the sequencing instrument, while other steps occur after sequencing is completed.
Primary Data Analysis
Real-Time Analysis (RTA) software operates during cycles of sequencing chemistry and imaging, providing base calls and associated quality scores representing the primary structure of DNA or RNA strands. This built-in software performs primary data analysis on Illumina sequencing systems automatically.
Multiomics data solution
Illumina Connected Analytics is an automated, scalable, and versatile muti-omics data science tool that enables population-wide study.
Secondary Data Analysis
Alignment and assembly of DNA or RNA fragments provides the full sequence for a sample, from which genetic variants can be determined.
DNA Sequencing Data Analysis
We offer intuitive bioinformatics tools to simplify DNA sequence alignment, variant calling, and data visualization, and provide ultra-rapid secondary analysis.
RNA Sequencing Data AnalysisOur user-friendly software tools simplify NGS data analysis for a broad range of RNA sequencing experiments, from gene fusion detection to total RNA expression profiling.
Tertiary Data Analysis
From sequence data, you can use biological data mining and interpretation tools to convert data into knowledge.
Biological Data Interpretation
Interpreting genetic variation leads to knowledge and insights into basic biology, and the causes of diseases and how to treat or prevent them.
NGS Workflow Finder
Take the guesswork out of your next workflow. The NGS Workflow Finder provides personalized solution recommendations and resources so you can sequence with confidence.
Find your NGS workflow todayNGS Data Analysis Articles
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Featured Sequencing Data Analysis Solutions
Advancing genomic research with AI
Learn how artificial intelligence (AI) is transforming genomics by offering advanced tools to analyze and interpret complex genetic and multiomic data.
DRAGEN Bio-IT Platform
Perform fast, robust secondary analysis of NGS data. Analyze sequencing data from whole genomes, whole exomes, germline and somatic datasets, RNA sequencing experiments, and more.
Illumina Connected Analytics
Operationalize bioinformatics workflows with sequencer integration, automatic analysis of customizable workflows, or out-of-the-box DRAGEN pipelines.
Genomic Data Storage and Security
Securely store, process, and share large quantities of NGS and other genomic data in the cloud with built-in speed and scalability.
NGS Data Analysis Tips for New Users
Sequencing Data Examples
Explore sample data generated on Illumina sequencing systems. These examples help you understand sequencing data and analysis reports.
DNA Sequencing Data ExamplesRNA Sequencing Data Examples
Sequence File Formats
Sequencing data can be represented with a variety of file formats, many of which are interchangeable, and your informatics system needs to be able to handle the formats you’ll use.
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Additional Resources
Software Support
Access resources and support for Illumina software, including sequencing data analysis and other software tools.
Online Training
These free online courses cover common topics in library prep, sequencing, and data analysis.
Illumina DRAGEN Bio-IT Platform Training
Learn more about the accurate, ultra-rapid secondary analysis platform and accompanying pipelines.