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Illumina StrataMap Spatial Transcriptome: DRAGEN StrataMap pipeline demo

407 views | 2 months ago

A guide to kicking off analysis with DRAGEN StrataMap, including: using BaseSpace Run Planner for sample sheet generation and how to set parameters and launch analysis via auto-launch or manually in...

Illumina StrataMap Spatial Transcriptome: Library quantification and sequencing

222 views | 2 months ago

This video is designed to review the process of quantifying the library concentration and fragment size, then planning for sequencing on an Illumina sequencing system. Learn more at https://www.illumina.com/products/by-brand/stratamap.html...

Illumina StrataMap Spatial Transcriptome: Library preparation part two

358 views | 2 months ago

This video is designed to review best practices for the additional library preparation steps that occur with the StrataMap Spatial slide in the cassette and after through final library completion. Steps...

Illumina StrataMap Spatial Transcriptome: Permeabilization optimization

228 views | 2 months ago

This video is designed to show best practices for use of the permeabilization optimization kit with 6-well cassette during the permeabilize step. This workflow uses a time course for permeabilization...

Illumina StrataMap Spatial Transcriptome: Library preparation part one

407 views | 2 months ago

This video is designed to review best practices for the initial library preparation steps that occur with the StrataMap Spatial slide in the cassette. Steps include permeabilize tissue, synthesize first...

Illumina StrataMap Spatial Transcriptome: Illumina StrataMap Image Tool (ISIT) demo

352 views | 2 months ago

A step-by-step guide to using the Illumina Strata Map Image Tool (ISIT), including: image processing, quality control, sample area selection, and exporting results for downstream analysis. Learn more...

Illumina StrataMap Spatial Transcriptome: Applying or removing coverslip

244 views | 2 months ago

This video is designed to show the correct application and removal of a coverslip from the StrataMap spatial slide. The coverslip is applied before imaging or storage. Learn more at https://www.illumina.com/products/by-brand/stratamap.html...

Illumina StrataMap Spatial Transcriptome: Handling spatial slide and cassette

238 views | 2 months ago

This video is designed for users seeking best practices for handling the spatial slide as well as assembly and use of the cassette lid and base. Learn more at https://www.illumina.com/products/by-brand/stratamap.html...