Making data analysis easy

Local Run Manager automates data analysis and run management on the iSeq 100 System

iSeq 100 System Software Tools

Each iSeq 100 System is delivered with Local Run Manager software already installed on the instrument. Local Run Manager makes it easy to plan experiments, monitor sequencing runs as they progress, and analyze data after sequencing is complete. It integrates with the instrument control software and is easily accessed through a web browser, with a user-friendly touch screen.

When starting a sequencing run on the iSeq 100 System, simply select the appropriate analysis module and library preparation kit used in your experiment. The software automatically performs on-instrument data analysis after sequencing completes and delivers results in intuitive reports. These reports can be viewed on the iSeq 100 System itself, or remotely from a computer on the same local area network. Local Run Manager currently offers the following analysis modules.

Result count:  11

Systems
Available Analysis Modules
TruSight Tumor 15 Analysis Module
TruSight Tumor 15 Analysis Module

Analyzes and generates a filtered report for samples prepared using the TruSightTumor 15 assay for 15 genes associated with solid tumors.

View sample data
Small RNA Analysis Module
Small RNA Analysis Module

Aligns reads and outputs hits. Performs optional novel precursor discovery and pairwise differential expression analysis.

View sample data
RNA Fusion Analysis Module
RNA Fusion Analysis Module

Aligns reads and detects fusions for RNA libraries prepared with the TruSight RNA Fusion Panel kit.

View sample data
Resequencing Analysis Module
Resequencing Analysis Module

Aligns reads and performs variant analysis for whole-genome sequencing of small genomes.

View sample data
DNA Enrichment Analysis Module
DNA Enrichment Analysis Module

Aligns reads against a whole genome reference and performs variant analysis for specified regions of interest.

View sample data
RNA Amplicon Analysis Module
RNA Amplicon Analysis Module

Enables streamlined differential expression analysis of AmpliSeq for Illumina RNA targeted panels sequenced on Illumina sequencing systems.

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Targeted RNA Module
Targeted RNA Module

Enables streamlined differential expression analysis of TruSeq Targeted RNA panels sequenced on Illumina sequencing systems.

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GenerateFASTQ Analysis Module
GenerateFASTQ Analysis Module

Generates demultiplexed FASTQ files for further downstream analysis.

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DNA Amplicon Analysis Module
DNA Amplicon Analysis Module

Enables streamlined variant detection of AmpliSeq for Illumina DNA and TruSeq Amplicon panels sequenced on Illumina sequencing systems.

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Amplicon Module
Amplicon Module

Enables streamlined variant detection of TruSeq Amplicon panels sequenced on Illumina sequencing systems.

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Amplicon DS Analysis Module
Amplicon DS Analysis Module

Enables streamlined analysis of the Illumina TruSight Tumor 26 and dual pool (dual strand) TruSeq Custom Amplicon panels.

View sample data

Download Analysis Modules or Get Support

Download a specific analysis software module or access Local Run Manager technical support information.

DesignStudio
Custom Assay Design with DesignStudio

DesignStudio Software guides you through creation of custom sequencing and microarray assays. This web-based assay design tool streamlines the selection of targets, submission and review of designs, and purchase of complete kits.

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BaseSpace Sequence Hub
Data Analysis in BaseSpace Sequence Hub

BaseSpace Sequence Hub is a powerful computing environment for analyzing, managing, and sharing data. It integrates with Illumina instruments, so you can set up runs, monitor progress, and stream data directly to the cloud. BaseSpace Sequence Hub also provides access to a curated set of data analysis apps.

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BaseSpace Clarity LIMS
BaseSpace Clarity LIMS

BaseSpace Clarity LIMS is a laboratory information management system that helps labs track samples and optimize procedures and workflows. It automates routine tasks and integrates with your laboratory’s ecosystem.

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