NovaSeq X Series ordering
Advanced chemistry, optics, and informatics combine to deliver exceptional sequencing speed and data quality, outstanding throughput, and scalability.
Ordering the MiniSeq Sequencing System
Order a MiniSeq System today. Speak to a representative for information on pricing, availability, and more.
We are making the MiniSeq Sequencing System obsolete. It will be available for order until September 30, 2025. We will continue to provide full system support through December 31, 2029. For more information, refer to PON2025-1657. The MiSeq i100 Series is the recommended alternative.
Documentation
Product literature
Support documentation
- MiniSeq System Site Prep Guide Documentation
- MiniSeq System Safety and Compliance Guide Documentation
- MiniSeq System Denature and Dilute Libraries Guide Documentation
- MiniSeq System Custom Primers Guide Documentation
- RFID Reader Compliance Guide Documentation
- All TruSight Tumor 170 Kit Support
- All MiniSeq Support
- All TruSight RNA Fusion Panel Support
Resources
The MiniSeq System: A simple, affordable sequencing solution
How do I prepare for my Illumina instrument delivery?
In this video, an Illumina Field Applications Scientist discusses what to expect during the preinstallation, shipping, and delivery stages. We’ll highlight important steps in the process and introduce you to available resources.
Identify the best approach, manage your workflow, purchase what you need, and get support.
Library preparation is a required sequencing step. Use our selection tool to determine the best library prep kit for your needs based on your application, method, species and more.
Instrument (1)
MiniSeq System
SY-420-1001
Includes one MiniSeq Sequencing System with embedded touch screen monitor and on-instrument computer, MiniSeq Control Software, analysis and management software to support automated generation of DNA clonal clusters by bridge amplification, sequencing, and analysis. Includes installation, training, and 12 months warranty (including parts and labor). Qualification services, instrument service plans, and reagent kits sold separately.
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Services (3)
MiniSeq Installation and Operational Qualification
20004138
Verifies that the MiniSeq Sequencing System has been delivered, installed, and is operating as intended according to manufacturer specifications. Appropriate documentation is provided.
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MiniSeq Performance Qualification
20004545
Verifies that the MiniSeq Sequencing System is performing as intended according to manufacturer specifications. Appropriate documentation is provided.
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MiniSeq Operational Qualification
20004136
Verifies that the MiniSeq Sequencing System is operating as intended according to manufacturer specifications. Appropriate documentation is provided.
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Accessory products (1)
MiniSeq Control Software/Windows 10 - No Contract
20038657
Includes MiniSeq Control Software for Windows 10 upgrade for customers without warranty or service contract. Includes hard drive, labor, and travel.
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Selection summary
Product
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Summary
Product
Catalog ID
Quantity
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Required products
Required products:
MiniSeq Reagent Kit for your chosen number of cycles (mid-output, high-output, or rapid)
Library prep kit for your chosen method and application
Optional products:
MiniSeq Installation and Operational Qualification Service
MiniSeq Performance Qualification Service
MiniSeq Operational Qualification Service
MiniSeq Control Software for Windows 10 upgrade
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Results
FAQs
Run duration depends on the type of flow cell and number of cycles. For more information and sample run times, see MiniSeq System specifications.
Yes, the MiniSeq System includes Local Run Manager (LRM) onboard. LRM allows users to create sequencing runs, monitor status, view results, and analyze data automatically upon completion of a sequencing run. Additional analysis options are available through a wide range of open-source or commercial pipelines developed for Illumina data. Data can also be instantly transferred, analyzed, archived, and shared securely with BaseSpace Sequence Hub.
The MiniSeq System delivers focused power in a small footprint that is accessible to smaller labs. It provides cost-effective sequencing even for a low number of samples. View a side-by-side comparison of Illumina sequencing systems to learn how MiniSeq System features compare with the iSeq 100 System, MiSeq Series, NextSeq 550 Series, and NextSeq 1000 and NextSeq 2000 Systems.
The MiniSeq System enables small genome, amplicon, targeted enrichment, and RNA sequencing of low library volumes with associated analysis options using BaseSpace apps or Local Run Manager analysis modules. For more information, see the MiniSeq System applications page.
For a list of specific library prep kits associated with Local Run Manager analysis modules, see compatible libraries.
Support documentation, product information, tools, and training are located at MiniSeq System Support Resources. You can also contact Illumina Technical Support at techsupport@illumina.com.
Yes. Third-party analysis options require sequencing data in the FASTQ file format. Generate FASTQ analysis module in Local Run Manager to convert base calls to FASTQ files. No further analysis is performed.
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Results
MiSeq Reagent Kit v3
Optimized reagent kit that provides increased cluster density and read length, improving sequencing quality scores compared to earlier versions.
TruSight Oncology 500
Enable CGP with a large pan-cancer panel covering all major variant classes plus gene signatures (TMB, MSI, and HRD) from FFPE tissue.
Illumina DNA Prep
A fast, integrated workflow for preparing libraries for use in a wide range of sequencing applications.
COVIDSeq Assay (96 samples)
This low- to mid-throughput NGS assay enables labs of any size to identify and track the emergence and prevalence of novel SARS-CoV-2 variants.
MiniSeq Reagent Kit
MiniSeq System Reagent kits have a ready-to-use cartridge with two-channel SBS chemistry for cost-efficient sequencing, even for low sample numbers.
Respiratory Pathogen ID/AMR Enrichment Panel Kit
Library prep and enrichment kit that delivers highly sensitive, comprehensive respiratory pathogen identification and antimicrobial resistance insights.
TruSight Hereditary Cancer Panel
Targeted sequencing panel that assesses germline mutations across 113 genes and 125 SNPs associated with genetic cancer risk predisposition.
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